JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0569.1 MYC4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0569.2 MYC4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0570.1 ABF1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0570.2 ABF1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0570.3 ABF1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0571.1 ANT Arabidopsis thaliana AP2/EREBP AP2
MA0571.2 ANT Arabidopsis thaliana AP2/EREBP AP2
MA0573.1 ATHB-9 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0573.2 ATHB-9 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0574.1 MYB15 Arabidopsis thaliana Tryptophan cluster factors MYB
Showing 10 profiles of page 112 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.