JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0528.1 ZNF263 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0528.2 ZNF263 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0528.3 ZNF263 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0529.1 BEAF-32 Drosophila melanogaster C2H2 zinc finger factors Zinc finger, BED-type
MA0529.2 BEAF-32 Drosophila melanogaster C2H2 zinc finger factors Zinc finger, BED-type
MA0529.3 BEAF-32 Drosophila melanogaster C2H2 zinc finger factors Zinc finger, BED-type
MA0530.1 cnc::maf-S Drosophila melanogaster Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0530.2 cnc::maf-S Drosophila melanogaster Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0531.1 CTCF Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0531.2 CTCF Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 105 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.