JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0516.3 SP2 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0517.1 STAT1::STAT2 Homo sapiens STAT domain factors STAT factors
MA0517.2 STAT1::STAT2 Homo sapiens STAT domain factors STAT factors
MA0518.1 Stat4 Mus musculus STAT domain factors STAT factors
MA0518.2 Stat4 Mus musculus STAT domain factors STAT factors
MA0519.1 Stat5a::Stat5b Mus musculus STAT domain factors STAT factors
MA0519.2 Stat5a::Stat5b Mus musculus STAT domain factors STAT factors
MA0520.1 Stat6 Mus musculus STAT domain factors STAT factors
MA0520.2 Stat6 Mus musculus STAT domain factors STAT factors
MA0521.1 Tcf12 Mus musculus Basic helix-loop-helix factors (bHLH) E2A
Showing 10 profiles of page 102 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.