JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0511.1 RUNX2 Homo sapiens Runt domain factors Runt-related factors
MA0511.2 RUNX2 Homo sapiens Runt domain factors Runt-related factors
MA0512.1 Rxra Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0512.2 Rxra Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0514.1 Sox3 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0514.2 Sox3 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0514.3 Sox3 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0515.1 Sox6 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0516.1 SP2 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0516.2 SP2 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 10 profiles of page 101 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.